Package: PeakSegDP
Maintainer: Toby Dylan Hocking <toby.hocking@r-project.org>
Author: Toby Dylan Hocking, Guillem Rigaill
Version: 2024.1.24
License: GPL-3
URL: https://github.com/tdhock/PeakSegDP
BugReports: https://github.com/tdhock/PeakSegDP/issues
Title: Dynamic Programming Algorithm for Peak Detection in ChIP-Seq
        Data
Description: A quadratic time dynamic programming algorithm can be used
        to compute an approximate solution to the problem of finding
        the most likely changepoints with respect to the Poisson
        likelihood, subject to a constraint on the number of segments,
        and the changes which must alternate: up, down, up, down, etc.
        For more info read
        <http://proceedings.mlr.press/v37/hocking15.html> "PeakSeg:
        constrained optimal segmentation and supervised penalty
        learning for peak detection in count data" by TD Hocking et al,
        proceedings of ICML2015.
Suggests: ggplot2 (>= 2.0), testthat, penaltyLearning
Depends: R (>= 2.10)
Repository: https://tdhock.r-universe.dev
Date/Publication: 2024-01-24 18:48:29 UTC
RemoteUrl: https://github.com/tdhock/peaksegdp
RemoteRef: HEAD
RemoteSha: 618128bb8163323bfa68ad75e24f5ca790b61371
NeedsCompilation: yes
Packaged: 2026-06-24 02:21:11 UTC; root