NEWS

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PeakSegDP 2024.1.24 (2024-01-24)

• reformat NEWS.
• fix man pages for CRAN.

PeakSegDP 2017.08.15 (2017-08-15)

• remove binSum.
• add cDPA_interface.

PeakSegDP 2017.06.20 (2017-06-20)

• depend on penaltyLearning, delete related code in this pkg.

PeakSegDP 2016.08.06

• Suggest ggplot2 >= 2.0, new geom_tallrect implementation.
• cDPA C code now computes total Poisson loss which is consistent with the PoissonLoss R function, and with other packages (Segmentor3IsBack, coseg). It has been significantly cleaned up (duplication removed).

PeakSegDP 2015.04.07

• move joint segmentation code to PeakSegJoint package.

PeakSegDP 2015.04.02

• multiSampleSegZoom C function.
• R implementation of multiSampleSegSome.

PeakSegDP 2015.03.27

• Scripts up to Step4 under exec/

PeakSegDP 2015.03.23

• Error checking in binSum.
• chrom and sample ratio features in exec/Step1.R

PeakSegDP 2015.03.16

• multiSampleSeg Optimal and Heuristic C code.

PeakSegDP 2015.03.11

• clusterPeaks C code.
• LinDynProg.c renamed to cDPA to be consistent with paper.

PeakSegDP 2015.03.05

• Do not use GSL headers for positive infinity cost; instead use INFINITY defined in "math.h"

PeakSegDP 2015.03.03

• fista.R interval regression code.
• binSum C code sets count to -1 for profiles that are too short for the number of bins requested.

PeakSegDP 2015.02.27

• binSum C code for quickly computing sums over bins of constant size.

PeakSegDP 2014.11.10

• warning when user requests X peaks but that model is infeasible.