Changes in version 2024.1.24 (2024-01-24)                

    o   reformat NEWS.

    o   fix man pages for CRAN.

               Changes in version 2017.08.15 (2017-08-15)               

    o   remove binSum.

    o   add cDPA_interface.

               Changes in version 2017.06.20 (2017-06-20)               

    o   depend on penaltyLearning, delete related code in this pkg.

                     Changes in version 2016.08.06                      

    o   Suggest ggplot2 >= 2.0, new geom_tallrect implementation.

    o   cDPA C code now computes total Poisson loss which is consistent with the PoissonLoss R function, and with other packages (Segmentor3IsBack, coseg). It has been significantly cleaned up (duplication removed).

                     Changes in version 2015.04.07                      

    o   move joint segmentation code to PeakSegJoint package.

                     Changes in version 2015.04.02                      

    o   multiSampleSegZoom C function.

    o   R implementation of multiSampleSegSome.

                     Changes in version 2015.03.27                      

    o   Scripts up to Step4 under exec/

                     Changes in version 2015.03.23                      

    o   Error checking in binSum.

    o   chrom and sample ratio features in exec/Step1.R

                     Changes in version 2015.03.16                      

    o   multiSampleSeg Optimal and Heuristic C code.

                     Changes in version 2015.03.11                      

    o   clusterPeaks C code.

    o   LinDynProg.c renamed to cDPA to be consistent with paper.

                     Changes in version 2015.03.05                      

    o   Do not use GSL headers for positive infinity cost; instead use INFINITY defined in "math.h"

                     Changes in version 2015.03.03                      

    o   fista.R interval regression code.

    o   binSum C code sets count to -1 for profiles that are too short for the number of bins requested.

                     Changes in version 2015.02.27                      

    o   binSum C code for quickly computing sums over bins of constant size.

                     Changes in version 2014.11.10                      

    o   warning when user requests X peaks but that model is infeasible.