NEWS

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PeakSegDisk 2024.10.1 (2024-10-02)

• src/interface.cpp error -> Rf_error for compilation without remap, thanks CRAN.

PeakSegDisk 2023.11.27 (2023-11-28)

• remove extra Rprintf args from funPieceListLog.cpp to silence compilation warning on CRAN: funPieceListLog.cpp:1039:17: warning: too many arguments for format [-Wformat-extra-args]

PeakSegDisk 2023.9.4 (2023-09-06)

• Un-exported fun arg docs, to avoid CRAN NOTE.
• multiprocess -> multisession.

PeakSegDisk 2020.8.13 (2020-08-14)

• DESCRIPTION: https for URL/BugReports, Suggests: markdown.

PeakSegDisk 2019.12.9

• Various fixes to support paths with spaces and parens.
• fread(file=..) to avoid interpreting a file name with spaces as a command.
• fread.last calls normalizePath before shQuote, so that tilde is expanded to the home dir.
• fread.last works with paths containing spaces and parens.

PeakSegDisk 2019.12.2

• test/bugfix for PeakSegFPOP_vec, pen.num passed along to PeakSegFPOP_df instead of always using 10.5 for penalty.

PeakSegDisk 2019.9.27 (2019-11-18)

• db file may be specified.

PeakSegDisk 2019.9.10 (2019-09-11)

• Change-Point pkg title for CRAN.
• inlinedocs update \\t in Rd.

PeakSegDisk 2019.6.5

• do not write first up cost, which is undefined.

PeakSegDisk 2018.11.14

• export fread.first/last
• check for empty loss/timing files

PeakSegDisk 2018.10.31

• Use wc/nrows/skip in fread.first/last rather than fread("head/tail -1 file")

PeakSegDisk 2018.10.30

• PKG_LIBS in Makevars: remove -ldb_cxx -ldb, add -pthread

PeakSegDisk 2018.10.26

• add -ldb_cxx -ldb to Makevars for solaris.
• in SystemRequirements, link to source, name debian packages.
• cast log(int) to double, const DbException& e to avoid solaris warn/err.

PeakSegDisk 2018.10.25

• C++ code writes number of bedGraph lines to loss file.
• problem.PeakSegFPOP outputs two data.tables rather than three (timings and loss are combined).

PeakSegDisk 2018.09.28

• Forked from PeakSegPipeline.
• problem.PeakSegFPOP: before was checking start/end pos in segments file with start/end pos in directory name. Now checking first/last line in coverage.bedGraph. No longer import namedCapture.