Changes in version 2024.10.1 (2024-10-02) o src/interface.cpp error -> Rf_error for compilation without remap, thanks CRAN. Changes in version 2023.11.27 (2023-11-28) o remove extra Rprintf args from funPieceListLog.cpp to silence compilation warning on CRAN: funPieceListLog.cpp:1039:17: warning: too many arguments for format [-Wformat-extra-args] Changes in version 2023.9.4 (2023-09-06) o Un-exported fun arg docs, to avoid CRAN NOTE. o multiprocess -> multisession. Changes in version 2020.8.13 (2020-08-14) o DESCRIPTION: https for URL/BugReports, Suggests: markdown. Changes in version 2019.12.9 o Various fixes to support paths with spaces and parens. o fread(file=..) to avoid interpreting a file name with spaces as a command. o fread.last calls normalizePath before shQuote, so that tilde is expanded to the home dir. o fread.last works with paths containing spaces and parens. Changes in version 2019.12.2 o test/bugfix for PeakSegFPOP_vec, pen.num passed along to PeakSegFPOP_df instead of always using 10.5 for penalty. Changes in version 2019.9.27 (2019-11-18) o db file may be specified. Changes in version 2019.9.10 (2019-09-11) o Change-Point pkg title for CRAN. o inlinedocs update \\t in Rd. Changes in version 2019.6.5 o do not write first up cost, which is undefined. Changes in version 2018.11.14 o export fread.first/last o check for empty loss/timing files Changes in version 2018.10.31 o Use wc/nrows/skip in fread.first/last rather than fread("head/tail -1 file") Changes in version 2018.10.30 o PKG_LIBS in Makevars: remove -ldb_cxx -ldb, add -pthread Changes in version 2018.10.26 o add -ldb_cxx -ldb to Makevars for solaris. o in SystemRequirements, link to source, name debian packages. o cast log(int) to double, const DbException& e to avoid solaris warn/err. Changes in version 2018.10.25 o C++ code writes number of bedGraph lines to loss file. o problem.PeakSegFPOP outputs two data.tables rather than three (timings and loss are combined). Changes in version 2018.09.28 o Forked from PeakSegPipeline. o problem.PeakSegFPOP: before was checking start/end pos in segments file with start/end pos in directory name. Now checking first/last line in coverage.bedGraph. No longer import namedCapture.