Package: PeakError 2023.9.4

PeakError: Compute the Label Error of Peak Calls

Chromatin immunoprecipitation DNA sequencing results in genomic tracks that show enriched regions or peaks where proteins are bound. This package implements fast C code that computes the true and false positives with respect to a database of annotated region labels.

Authors:Toby Dylan Hocking

PeakError_2023.9.4.tar.gz
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PeakError.pdf |PeakError.html
PeakError/json (API)
NEWS

# Install 'PeakError' in R:
install.packages('PeakError', repos = c('https://tdhock.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/tdhock/peakerror/issues

On CRAN:

5 exports 4 stars 1.54 score 0 dependencies 1 dependents 1 mentions 15 scripts 354 downloads

Last updated 1 years agofrom:96c7a051aa. Checks:OK: 9. Indexed: yes.

TargetResultDate
Doc / VignettesOKAug 28 2024
R-4.5-win-x86_64OKAug 28 2024
R-4.5-linux-x86_64OKAug 28 2024
R-4.4-win-x86_64OKAug 28 2024
R-4.4-mac-x86_64OKAug 28 2024
R-4.4-mac-aarch64OKAug 28 2024
R-4.3-win-x86_64OKAug 28 2024
R-4.3-mac-x86_64OKAug 28 2024
R-4.3-mac-aarch64OKAug 28 2024

Exports:checkChromcheckPositionsPeakErrorPeakErrorChromPeaks

Dependencies:

Readme and manuals

Help Manual

Help pageTopics
checkChromcheckChrom
checkPositionscheckPositions
PeakErrorPeakError
PeakErrorChromPeakErrorChrom
PeaksPeaks