Package: PeakError 2023.9.4

PeakError: Compute the Label Error of Peak Calls

Chromatin immunoprecipitation DNA sequencing results in genomic tracks that show enriched regions or peaks where proteins are bound. This package implements fast C code that computes the true and false positives with respect to a database of annotated region labels.

Authors:Toby Dylan Hocking

PeakError_2023.9.4.tar.gz
PeakError_2023.9.4.zip(r-4.7-x86_64)PeakError_2023.9.4.zip(r-4.6-x86_64)PeakError_2023.9.4.zip(r-4.5-x86_64)
PeakError_2023.9.4.tgz(r-4.6-x86_64)PeakError_2023.9.4.tgz(r-4.6-arm64)PeakError_2023.9.4.tgz(r-4.5-x86_64)PeakError_2023.9.4.tgz(r-4.5-arm64)
PeakError_2023.9.4.tar.gz(r-4.7-arm64)PeakError_2023.9.4.tar.gz(r-4.7-x86_64)PeakError_2023.9.4.tar.gz(r-4.6-arm64)PeakError_2023.9.4.tar.gz(r-4.6-x86_64)
PeakError_2023.9.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
PeakError/json (API)

# Install 'PeakError' in R:
install.packages('PeakError', repos = c('https://tdhock.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/tdhock/peakerror/issues

On CRAN:

Conda:

3.28 score 4 stars 1 packages 16 scripts 229 downloads 1 mentions 5 exports 0 dependencies

Last updated from:96c7a051aa. Checks:13 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK143
linux-devel-x86_64OK146
source / vignettesOK201
linux-release-arm64OK106
linux-release-x86_64OK156
macos-release-arm64OK91
macos-release-x86_64OK179
macos-oldrel-arm64OK96
macos-oldrel-x86_64OK137
windows-devel-x86_64OK88
windows-release-x86_64OK77
windows-oldrel-x86_64OK71
wasm-releaseOK93

Exports:checkChromcheckPositionsPeakErrorPeakErrorChromPeaks

Dependencies:

Readme and manuals

Help Manual

Help pageTopics
checkChromcheckChrom
checkPositionscheckPositions
PeakErrorPeakError
PeakErrorChromPeakErrorChrom
PeaksPeaks