Package: FLOPART 2024.6.19

FLOPART: Functional Labeled Optimal Partitioning

Provides an efficient 'C++' code for computing an optimal segmentation model with Poisson loss, up-down constraints, and label constraints, as described by Kaufman et al. (2024) <doi:10.1080/10618600.2023.2293216>.

Authors:Toby Dylan Hocking [aut, cre]

FLOPART_2024.6.19.tar.gz
FLOPART_2024.6.19.zip(r-4.7)FLOPART_2024.6.19.zip(r-4.6)FLOPART_2024.6.19.zip(r-4.5)
FLOPART_2024.6.19.tgz(r-4.6-x86_64)FLOPART_2024.6.19.tgz(r-4.6-arm64)FLOPART_2024.6.19.tgz(r-4.5-x86_64)FLOPART_2024.6.19.tgz(r-4.5-arm64)
FLOPART_2024.6.19.tar.gz(r-4.7-arm64)FLOPART_2024.6.19.tar.gz(r-4.7-x86_64)FLOPART_2024.6.19.tar.gz(r-4.6-arm64)FLOPART_2024.6.19.tar.gz(r-4.6-x86_64)
FLOPART_2024.6.19.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
FLOPART/json (API)

# Install 'FLOPART' in R:

install.packages('FLOPART', repos = c('https://tdhock.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/tdhock/flopart/issues

Uses libs:

c++– GNU Standard C++ Library v3

Datasets:

Mono27ac - H3K27ac ChIP-seq data from one Monocyte sample
Mono27ac.simple - Smaller H3K27ac ChIP-seq data from one Monocyte sample

On CRAN:

cpp

3.70 score 3 scripts 569 downloads 4 exports 2 dependencies

Last updated from:68498ce6a7. Checks:13 OK. Indexed: yes.

Target	Result	Time
linux-devel-arm64	OK	128
linux-devel-x86_64	OK	128
source / vignettes	OK	186
linux-release-arm64	OK	123
linux-release-x86_64	OK	121
macos-release-arm64	OK	81
macos-release-x86_64	OK	221
macos-oldrel-arm64	OK	87
macos-oldrel-x86_64	OK	158
windows-devel	OK	128
windows-release	OK	106
windows-oldrel	OK	125
wasm-release	OK	102

Exports:FLOPART FLOPART_data FLOPART_interface get_label_code

Dependencies:data.table Rcpp

Comparison

No label constraints

Rendered fromcomparison.Rmdusingknitr::knitr

Last update: 2023-09-01
Started: 2023-09-01

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Functional Labeled Optimal Partitioning	FLOPART
Convert data for input to FLOPART	FLOPART_data
Interface to FLOPART C++ code	FLOPART_interface
Lookup the integer values used to represent different label types	get_label_code
H3K27ac ChIP-seq data from one Monocyte sample	Mono27ac
Smaller H3K27ac ChIP-seq data from one Monocyte sample	Mono27ac.simple