Package: PeakSegOptimal 2024.10.1
PeakSegOptimal: Optimal Segmentation Subject to Up-Down Constraints
Computes optimal changepoint models using the Poisson likelihood for non-negative count data, subject to the PeakSeg constraint: the first change must be up, second change down, third change up, etc. For more info about the models and algorithms, read "Constrained Dynamic Programming and Supervised Penalty Learning Algorithms for Peak Detection" <https://jmlr.org/papers/v21/18-843.html> by TD Hocking et al.
Authors:
PeakSegOptimal_2024.10.1.tar.gz
PeakSegOptimal_2024.10.1.zip(r-4.7-x86_64)PeakSegOptimal_2024.10.1.zip(r-4.7-arm64)PeakSegOptimal_2024.10.1.zip(r-4.6-x86_64)PeakSegOptimal_2024.10.1.zip(r-4.6-arm64)PeakSegOptimal_2024.10.1.zip(r-4.5-x86_64)
PeakSegOptimal_2024.10.1.tgz(r-4.6-x86_64)PeakSegOptimal_2024.10.1.tgz(r-4.6-arm64)PeakSegOptimal_2024.10.1.tgz(r-4.5-x86_64)PeakSegOptimal_2024.10.1.tgz(r-4.5-arm64)
PeakSegOptimal_2024.10.1.tar.gz(r-4.7-arm64)PeakSegOptimal_2024.10.1.tar.gz(r-4.7-x86_64)PeakSegOptimal_2024.10.1.tar.gz(r-4.6-arm64)PeakSegOptimal_2024.10.1.tar.gz(r-4.6-x86_64)
PeakSegOptimal_2024.10.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
PeakSegOptimal/json (API)
| # Install 'PeakSegOptimal' in R: |
| install.packages('PeakSegOptimal', repos = c('https://tdhock.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/tdhock/peaksegoptimal/issues
- H3K4me3_PGP_immune_chunk24 - H3K4me3_PGP_immune ChIP-seq data set chunk 24
- H3K4me3_XJ_immune_chunk1 - H3K4me3_XJ_immune chunk 1
Last updated from:40b762a4ac. Checks:4 NOTE, 11 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | NOTE | 132 | ||
| linux-devel-x86_64 | NOTE | 183 | ||
| source / vignettes | OK | 194 | ||
| linux-release-arm64 | OK | 125 | ||
| linux-release-x86_64 | OK | 156 | ||
| macos-release-arm64 | OK | 150 | ||
| macos-release-x86_64 | OK | 243 | ||
| macos-oldrel-arm64 | OK | 144 | ||
| macos-oldrel-x86_64 | OK | 234 | ||
| windows-devel-arm64 | NOTE | 300 | ||
| windows-devel-x86_64 | NOTE | 345 | ||
| windows-release-arm64 | OK | 278 | ||
| windows-release-x86_64 | OK | 259 | ||
| windows-oldrel-x86_64 | OK | 295 | ||
| wasm-release | OK | 104 |
Exports:oracleModelComplexityPeakSegFPOPPeakSegFPOPchromPeakSegPDPAPeakSegPDPAchromPeakSegPDPAInfPoissonLoss
Dependencies:clicpp11data.tablefarverggplot2gluegtableisobandlabelinglifecyclepenaltyLearningR6RColorBrewerrlangS7scalesvctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| H3K4me3_PGP_immune ChIP-seq data set chunk 24 | H3K4me3_PGP_immune_chunk24 |
| H3K4me3_XJ_immune chunk 1 | H3K4me3_XJ_immune_chunk1 |
| oracleModelComplexity | oracleModelComplexity |
| PeakSegFPOP | PeakSegFPOP |
| PeakSegFPOPchrom | PeakSegFPOPchrom |
| PeakSegPDPA | PeakSegPDPA |
| PeakSegPDPAchrom | PeakSegPDPAchrom |
| PeakSegPDPAInf | PeakSegPDPAInf |
| PoissonLoss | PoissonLoss |