Simple data set where depmix errors for nstates=2 | Data set where nstates=5 errors | Fit several data sequences | How to constrain common variance parameter? | Forward-backward algorithm speed comparison | Viterbi algorithm speed comparison
Package: plotHMM 2025.7.23
plotHMM: Plot Hidden Markov Models
Hidden Markov Models are useful for modeling sequential data. This package provides several functions implemented in C++ for explaining the algorithms used for Hidden Markov Models (forward, backward, decoding, learning).
Authors:
plotHMM_2025.7.23.tar.gz
plotHMM_2025.7.23.zip(r-4.7-x86_64)plotHMM_2025.7.23.zip(r-4.7-arm64)plotHMM_2025.7.23.zip(r-4.6-x86_64)plotHMM_2025.7.23.zip(r-4.6-arm64)plotHMM_2025.7.23.zip(r-4.5-x86_64)
plotHMM_2025.7.23.tgz(r-4.6-x86_64)plotHMM_2025.7.23.tgz(r-4.6-arm64)plotHMM_2025.7.23.tgz(r-4.5-x86_64)plotHMM_2025.7.23.tgz(r-4.5-arm64)
plotHMM_2025.7.23.tar.gz(r-4.7-arm64)plotHMM_2025.7.23.tar.gz(r-4.7-x86_64)plotHMM_2025.7.23.tar.gz(r-4.6-arm64)plotHMM_2025.7.23.tar.gz(r-4.6-x86_64)
plotHMM_2025.7.23.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
plotHMM/json (API)
| # Install 'plotHMM' in R: |
| install.packages('plotHMM', repos = c('https://tdhock.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/tdhock/plothmm/issues
Datasets:
- buggy.5states - Buggy data with 5 states
- buggy.data - Buggy data with one state
Last updated from:be92fc1a96. Checks:15 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 175 | ||
| linux-devel-x86_64 | OK | 182 | ||
| source / vignettes | OK | 223 | ||
| linux-release-arm64 | OK | 133 | ||
| linux-release-x86_64 | OK | 128 | ||
| macos-release-arm64 | OK | 126 | ||
| macos-release-x86_64 | OK | 374 | ||
| macos-oldrel-arm64 | OK | 125 | ||
| macos-oldrel-x86_64 | OK | 477 | ||
| windows-devel-arm64 | OK | 240 | ||
| windows-devel-x86_64 | OK | 173 | ||
| windows-release-arm64 | OK | 255 | ||
| windows-release-x86_64 | OK | 141 | ||
| windows-oldrel-x86_64 | OK | 112 | ||
| wasm-release | OK | 141 |
Exports:backward_interfaceelnproductelnsumforward_interfacelogsumexpmultiply_interfacepairwise_interfacetransition_interfaceviterbi_interface
Dependencies:RcppRcppArmadillo
Comparison with depmixS4
Last update: 2023-08-29
Started: 2021-10-18
Multiple sequences
Simple data set where depmix errors for nstates=2
Last update: 2021-10-27
Started: 2021-10-27
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Backward algorithm | backward_interface |
| Buggy data with 5 states | buggy.5states |
| Buggy data with one state | buggy.data |
| Log probability arithmetic | elnproduct elnsum logsumexp |
| Forward algorithm | forward_interface |
| Multiply algorithm | multiply_interface |
| Pairwise algorithm | pairwise_interface |
| Transition algorithm | transition_interface |
| Viterbi algorithm | viterbi_interface |